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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_77858908_77860284_F

Intron Information:

Intron Rank:
141918
Intron Class:
major
Intron Phase:
Intron Coordinates:
77858908 - 77860284
Intron Length:
1377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTCTCCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
76.2
0.59
0.9
72.3
32.5
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
55.6
0.17
1.7
68.3
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026398
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018134
77858377 - 77860938
2562