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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_77938617_77938961_R

Intron Information:

Intron Rank:
152809
Intron Class:
major
Intron Phase:
Intron Coordinates:
77938617 - 77938961
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCGGCAAA
5'SS Class:
major
3'SS Sequence:
CTTCATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GTGTCTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.4
65
42.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
84.8
0.78
0.8
76.5
37.3
Minor 5ss
32.7
-2
3
39.5
46
Minor BPS
50.2
0.08
1.8
68.57
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029777
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026055
77936906 - 77939254
2349
ENSAPLT00000044012
77933990 - 77939254
5265