Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78082945_78083860_F

Intron Information:

Intron Rank:

125292

Intron Class:

major

Intron Phase:

Intron Coordinates:

78082945 - 78083860

Intron Length:

916

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACAATA

5'SS Class:

strong_major

3'SS Sequence:

GGTTTCATCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TTTGGTTTCATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

1.1

80.8

33.7

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

72.2

0.5

62.8

Minor 5ss

42.6

-0.8

57.9

46.3

Minor BPS

47.3

-0.2

2.2

65.01

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017461

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036477

78081296 - 78085427

4132