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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78134545_78135096_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78134545 - 78135096
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTATATTTAAAT
Flanking Amino Acid:
MIIAHELAHQWFGNLVTMEW
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.3
0.59
1
72.6
42.4
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
61.7
0.45
1.6
76.3
39.5

Associated Gene:

Gene:
ERAP1
Ensembl Gene ID:
ENSAPLG00000006509
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006832
78130791 - 78147433
16643