About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78137439_78137587_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78137439 - 78137587
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
ATGACCAAAACT
Flanking Amino Acid:
NEDLWNSMTNICPTVGTDKS
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1.2
93.2
21.2
Major BPS
70.2
0.5
1
72.1
33
Major PPT
89
0.88
0.6
83.8
24.4
Minor 5ss
33.8
-1.8
4.1
56
41.5
Minor BPS
49.9
0.08
2
72.28
44.2

Associated Gene:

Gene:
ERAP1
Ensembl Gene ID:
ENSAPLG00000006509
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006832
78130791 - 78147433
16643