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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78138769_78139046_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78138769 - 78139046
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GAACCACTAATA
Flanking Amino Acid:
VQRFLMTTKTDVIILPEEVE
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
45.9
-0.3
1.9
54.56
36.8

Associated Gene:

Gene:
ERAP1
Ensembl Gene ID:
ENSAPLG00000006509
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006832
78130791 - 78147433
16643