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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78139231_78142088_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78139231 - 78142088
Intron Length:
2858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTTCTTTTATCC
Flanking Amino Acid:
SLINNIFQLVRIKKIPISKA
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86
0.81
0.6
85.4
22
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
56.9
0.19
1.6
66.74
39.4

Associated Gene:

Gene:
ERAP1
Ensembl Gene ID:
ENSAPLG00000006509
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006832
78130791 - 78147433
16643