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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78144478_78144584_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78144478 - 78144584
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTCTTTTTGACA
Flanking Amino Acid:
LKENWEKLVEKFELGSNSIA
Intron Amino Acid Position:
856

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
75.8
33.6
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
85
0.79
0.9
83.2
32
Minor 5ss
34.3
-1.8
3.2
43.2
38.3
Minor BPS
72.3
0.7
1.1
77.18
33.8

Associated Gene:

Gene:
ERAP1
Ensembl Gene ID:
ENSAPLG00000006509
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006832
78130791 - 78147433
16643