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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78156416_78158364_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78156416 - 78158364
Intron Length:
1949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TAAATGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTAAAATTAAAT
Flanking Amino Acid:
ENKPVVDKVKEKSKSEHRDK
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
71.3
0.48
1
66.4
44.5
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
50.9
0.11
1.9
74.05
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020005
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025538
78154718 - 78160392
5675