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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78206433_78213802_R

Intron Information:

Intron Rank:
143231
Intron Class:
major
Intron Phase:
Intron Coordinates:
78206433 - 78213802
Intron Length:
7370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCTCTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
85.8
0.81
0.8
80
30.9
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024396
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020236
78191555 - 78214958
23404