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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78216756_78218175_R

Intron Information:

Intron Rank:
148496
Intron Class:
major
Intron Phase:
Intron Coordinates:
78216756 - 78218175
Intron Length:
1420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
CTGTGCAAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
87.1
0.83
0.7
84.9
29.2
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
44.9
-0.3
2.3
59.58
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027284
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046846
78216662 - 78218959
2298