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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78246504_78248429_F

Intron Information:

Intron Rank:
133062
Intron Class:
major
Intron Phase:
Intron Coordinates:
78246504 - 78248429
Intron Length:
1926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCTCA
5'SS Class:
major
3'SS Sequence:
TTTGTCTTGTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GAATATTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.6
39.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.8
0.69
1
81
36.6
Minor 5ss
43.7
-0.7
2.8
48.7
47
Minor BPS
47.6
-0.1
1.9
63.68
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021547
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033665
78245324 - 78248991
3668