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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78283682_78285784_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78283682 - 78285784
Intron Length:
2103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATTCTTACTG
Flanking Amino Acid:
FPRYDPTNENKHGTRCAGEI
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.7
0.67
1
77.8
40.5
Minor 5ss
32.3
-2
2.7
37.1
33.8
Minor BPS
56.4
0.06
1.7
59.08
43.4

Associated Gene:

Gene:
PCSK1
Ensembl Gene ID:
ENSAPLG00000005737
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005967
78270604 - 78303772
33169