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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78285874_78289640_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78285874 - 78289640
Intron Length:
3767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
AGATAGTAAATA
Flanking Amino Acid:
VGVAYNSKVGGIRMLDGIVT
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
73.9
0.54
1.1
79.3
33
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
42
-0.6
2.3
52.29
39.6

Associated Gene:

Gene:
PCSK1
Ensembl Gene ID:
ENSAPLG00000005737
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005967
78270604 - 78303772
33169