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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78289814_78292178_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78289814 - 78292178
Intron Length:
2365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTTTATAACA
Flanking Amino Acid:
QKAFEYGIKQGRNGKGSIFV
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.7
0.62
0.8
70.4
36.1
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
65.3
0.48
1.6
75.35
36.3

Associated Gene:

Gene:
PCSK1
Ensembl Gene ID:
ENSAPLG00000005737
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005967
78270604 - 78303772
33169