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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78294897_78296359_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78294897 - 78296359
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
GTAATTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACTGTAATT
Flanking Amino Acid:
CIVKDKSFEPRLLRANEEVI
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
69.3
0.43
1.1
64.8
45.4
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
62.1
0.46
2
84.21
37.1

Associated Gene:

Gene:
PCSK1
Ensembl Gene ID:
ENSAPLG00000005737
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005967
78270604 - 78303772
33169