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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78298397_78300237_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78298397 - 78300237
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTCCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
ATCCTGAGAACC
Flanking Amino Acid:
GTWVLRITDVSRRIQNEGRI
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
73.5
0.53
0.9
70.2
36.5
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
40.2
-0.7
2.2
51.7
39

Associated Gene:

Gene:
PCSK1
Ensembl Gene ID:
ENSAPLG00000005737
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005967
78270604 - 78303772
33169