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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78354757_78357741_R

Intron Information:

Intron Rank:
150251
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
78354757 - 78357741
Intron Length:
2985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ACATATGCAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
58
0.18
1.1
51.3
41.8
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028425
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048297
78354476 - 78379741
25266