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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7835517_7901943_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7835517 - 7901943
Intron Length:
66427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATCCAAATT
Flanking Amino Acid:
RSTYDSSASSGIVGPHLKAD
Intron Amino Acid Position:
1348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84
0.76
0.7
77
31.7
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
47.3
-0.1
2
68.48
42.9

Associated Gene:

Gene:
SETBP1
Ensembl Gene ID:
ENSAPLG00000017129
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042815
7827766 - 8074580
246815
ENSAPLT00000034374
7828875 - 8074580
245706
ENSAPLT00000025657
7827766 - 8074580
246815