About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78372772_78379525_R

Intron Information:

Intron Rank:
150253
Intron Class:
major
Intron Phase:
Intron Coordinates:
78372772 - 78379525
Intron Length:
6754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTCTGCTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.5
34.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
72.1
0.5
1
67.7
37.8
Minor 5ss
34.3
-1.8
3
44.8
42.9
Minor BPS
61.3
0.35
1.9
69.92
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028425
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048297
78354476 - 78379741
25266