About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78414342_78424712_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78414342 - 78424712
Intron Length:
10371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAGTCTTTACAT
Flanking Amino Acid:
PSIQFQGLQGVVKIPKAEVP
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
81.3
32.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
32.7
-2
3.4
40.8
45.4
Minor BPS
54.2
0.21
1.7
68.61
42.2

Associated Gene:

Gene:
ELL2
Ensembl Gene ID:
ENSAPLG00000005474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029473
78406328 - 78443105
36778
ENSAPLT00000022626
78406328 - 78441515
35188
ENSAPLT00000005686
78406328 - 78442853
36526