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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78433174_78433315_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78433174 - 78433315
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTAATCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GTAACCTGAAAT
Flanking Amino Acid:
DKQSLELILSRRVNSSQNTT
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
73.6
0.53
1
65.6
40.8
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
58.4
0.34
1.6
73.62
41.9

Associated Gene:

Gene:
ELL2
Ensembl Gene ID:
ENSAPLG00000005474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005686
78406328 - 78442853
36526
ENSAPLT00000029473
78406328 - 78443105
36778
ENSAPLT00000022626
78406328 - 78441515
35188
ENSAPLT00000019630
78406328 - 78441515
35188