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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78437503_78439256_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78437503 - 78439256
Intron Length:
1754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACAT
Flanking Amino Acid:
SSTSELPDYFMKYIAIVSHE
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79
0.65
0.8
80.2
31.7
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
64.8
0.54
1.7
84.29
36.6

Associated Gene:

Gene:
ELL2
Ensembl Gene ID:
ENSAPLG00000005474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019630
78406328 - 78441515
35188
ENSAPLT00000005686
78406328 - 78442853
36526
ENSAPLT00000029473
78406328 - 78443105
36778
ENSAPLT00000022626
78406328 - 78441515
35188