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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78469555_78472369_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
78469555 - 78472369
Intron Length:
2815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCCTT
5'SS Class:
weak_major
3'SS Sequence:
TTGCATTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTACATTTAATT
Flanking Amino Acid:
SQKPEFQDLSVEERNFVEMH
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.3
63.6
48.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71
0.47
1
69.7
41.2
Minor 5ss
48
-0.2
3.3
73.5
43.2
Minor BPS
65.4
0.56
1.4
79.41
36.4

Associated Gene:

Gene:
RHOBTB3
Ensembl Gene ID:
ENSAPLG00000005201
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005379
78467044 - 78496392
29349