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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78472467_78473788_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78472467 - 78473788
Intron Length:
1322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTGCTTGTATCT
Flanking Amino Acid:
SIVSLLKKAKFHNSDCLSTW
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.2
33.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
92.8
0.96
0.6
88.6
20.9
Minor 5ss
44.3
-0.6
3.2
65.5
45.8
Minor BPS
46
-0.2
2.2
68.16
43.3

Associated Gene:

Gene:
RHOBTB3
Ensembl Gene ID:
ENSAPLG00000005201
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005379
78467044 - 78496392
29349