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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78512499_78512587_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78512499 - 78512587
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGACAT
5'SS Class:
major
3'SS Sequence:
TTCCATGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAATATTTTATT
Flanking Amino Acid:
KFHALDSRCYHEGGPLNLGE
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.3
62.9
43.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.3
0.66
0.9
76.4
37.3
Minor 5ss
35.5
-1.6
3.3
53
43.9
Minor BPS
51.6
0.13
1.8
70.78
40.4

Associated Gene:

Gene:
RFESD
Ensembl Gene ID:
ENSAPLG00000028000
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019848
78508952 - 78513724
4773