Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78536149_78537123_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

78536149 - 78537123

Intron Length:

975

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTGCGTGTG

5'SS Class:

major

3'SS Sequence:

TGGTTTTATTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATTAT

U12 Branch Point Sequence:

TTCTTCTGTACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.4

0.25

1.2

56.3

42.9

Major BPS

76.9

0.67

66.3

40.4

Major PPT

0.56

0.9

74.3

40.6

Minor 5ss

31.8

-2.1

3.5

40.1

45.9

Minor BPS

0.4

1.8

80.33

41.4

Associated Gene:

Gene:

TTC37

Ensembl Gene ID:

ENSAPLG00000004474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029955

78535999 - 78583379

47381

ENSAPLT00000022679

78535999 - 78583311

47313

ENSAPLT00000004661

78535999 - 78583379

47381

ENSAPLT00000043925

78535999 - 78582545

46547

ENSAPLT00000038438

78535999 - 78579067

43069