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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78537717_78538749_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78537717 - 78538749
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTTCTGATCT
Flanking Amino Acid:
IEPNQLLAWQGLANLYEKSN
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.1
0.72
1
87.2
30.4
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
63.6
0.5
1.7
83.07
37.8

Associated Gene:

Gene:
TTC37
Ensembl Gene ID:
ENSAPLG00000004474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038438
78535999 - 78579067
43069
ENSAPLT00000029955
78535999 - 78583379
47381
ENSAPLT00000022679
78535999 - 78583311
47313
ENSAPLT00000004661
78535999 - 78583379
47381
ENSAPLT00000043925
78535999 - 78582545
46547