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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78552319_78552421_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78552319 - 78552421
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCTC
5'SS Class:
major
3'SS Sequence:
TCCTTTTATTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTGCTTCATCT
Flanking Amino Acid:
SQKKYEQAERSFQNAIERRA
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
41.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
80.7
0.69
0.8
81
30
Minor 5ss
41.8
-0.9
3.2
59.1
45.6
Minor BPS
56.3
0.28
1.9
79.81
42.6

Associated Gene:

Gene:
TTC37
Ensembl Gene ID:
ENSAPLG00000004474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038438
78535999 - 78579067
43069
ENSAPLT00000029955
78535999 - 78583379
47381
ENSAPLT00000022679
78535999 - 78583311
47313
ENSAPLT00000004661
78535999 - 78583379
47381
ENSAPLT00000043925
78535999 - 78582545
46547