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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78552549_78553714_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78552549 - 78553714
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TATTTCTTTATA
Flanking Amino Acid:
KGKTLTQLLKAAKLDSYLGS
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85.6
0.8
0.7
80.9
30.8
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
67.1
0.53
1.5
75.8
35.8

Associated Gene:

Gene:
TTC37
Ensembl Gene ID:
ENSAPLG00000004474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038438
78535999 - 78579067
43069
ENSAPLT00000022679
78535999 - 78583311
47313
ENSAPLT00000004661
78535999 - 78583379
47381
ENSAPLT00000043925
78535999 - 78582545
46547