Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78552549_78554691_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78552549 - 78554691

Intron Length:

2143

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAGCT

5'SS Class:

strong_major

3'SS Sequence:

GGTGCTTTGTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

TGTTTACTAATG

Flanking Amino Acid:

KGKTLTQLLKDTALSILNEV

Intron Amino Acid Position:

484

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

74.9

33.2

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

63.2

0.3

1.1

44.4

Minor 5ss

32.4

-2

3.5

48.3

47.4

Minor BPS

49.3

-0.1

61.82

Associated Gene:

Gene:

TTC37

Ensembl Gene ID:

ENSAPLG00000004474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029955

78535999 - 78583379

47381