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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78553895_78554691_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78553895 - 78554691
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATTGCAT
5'SS Class:
major
3'SS Sequence:
GGTGCTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTTACTAATG
Flanking Amino Acid:
VDLSVELGDTDTALSILNEV
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.1
0.29
1.1
55.4
43
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
63.2
0.3
1.1
62
44.4
Minor 5ss
39.1
-1.2
3.4
56.4
47.8
Minor BPS
49.3
-0.1
2
61.82
40

Associated Gene:

Gene:
TTC37
Ensembl Gene ID:
ENSAPLG00000004474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004661
78535999 - 78583379
47381
ENSAPLT00000043925
78535999 - 78582545
46547
ENSAPLT00000038438
78535999 - 78579067
43069
ENSAPLT00000022679
78535999 - 78583311
47313