About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78554817_78555260_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78554817 - 78555260
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGAGAA
5'SS Class:
major
3'SS Sequence:
TTGATATCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGATTTAAAT
Flanking Amino Acid:
RTGQPSQAVADLQAALRADP
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
65
35
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.9
0.63
0.9
74.6
40.2
Minor 5ss
31
-2.2
3.3
34.7
42.4
Minor BPS
62.8
0.48
1.7
82.06
39.2

Associated Gene:

Gene:
TTC37
Ensembl Gene ID:
ENSAPLG00000004474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029955
78535999 - 78583379
47381
ENSAPLT00000022679
78535999 - 78583311
47313
ENSAPLT00000004661
78535999 - 78583379
47381
ENSAPLT00000043925
78535999 - 78582545
46547
ENSAPLT00000038438
78535999 - 78579067
43069