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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78557599_78558394_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78557599 - 78558394
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TACCAATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTTTTCTTAAAT
Flanking Amino Acid:
YIEQALEFFTRATKHRPDVS
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
73.1
0.52
0.9
65.1
39.7
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
78.9
0.99
1.3
89.96
33.4

Associated Gene:

Gene:
TTC37
Ensembl Gene ID:
ENSAPLG00000004474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038438
78535999 - 78579067
43069
ENSAPLT00000029955
78535999 - 78583379
47381
ENSAPLT00000022679
78535999 - 78583311
47313
ENSAPLT00000004661
78535999 - 78583379
47381
ENSAPLT00000043925
78535999 - 78582545
46547