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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78559700_78559865_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78559700 - 78559865
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCCT
5'SS Class:
major
3'SS Sequence:
GATTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCACATTTGATT
Flanking Amino Acid:
ISELLEKSLQCIKKAVRLDS
Intron Amino Acid Position:
812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
60
44.4
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
84.5
0.78
0.8
81.5
35.8
Minor 5ss
32.4
-2
3.5
49
46.7
Minor BPS
51.1
0.12
1.5
65.79
39.1

Associated Gene:

Gene:
TTC37
Ensembl Gene ID:
ENSAPLG00000004474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029955
78535999 - 78583379
47381
ENSAPLT00000022679
78535999 - 78583311
47313
ENSAPLT00000004661
78535999 - 78583379
47381
ENSAPLT00000043925
78535999 - 78582545
46547
ENSAPLT00000038438
78535999 - 78579067
43069