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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78572031_78572141_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78572031 - 78572141
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCGTCTC
5'SS Class:
major
3'SS Sequence:
TTGTATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TCACTCTTATGT
Flanking Amino Acid:
AHALDSRYGKEALLNVAVNQ
Intron Amino Acid Position:
1229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
68.4
42.6
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
81.7
0.71
0.8
77.5
36.5
Minor 5ss
34.1
-1.8
3
45.1
42.8
Minor BPS
48.7
-0
1.9
65.49
45

Associated Gene:

Gene:
TTC37
Ensembl Gene ID:
ENSAPLG00000004474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038438
78535999 - 78579067
43069
ENSAPLT00000029955
78535999 - 78583379
47381
ENSAPLT00000022679
78535999 - 78583311
47313
ENSAPLT00000004661
78535999 - 78583379
47381
ENSAPLT00000043925
78535999 - 78582545
46547