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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78572254_78573244_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
78572254 - 78573244
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTGTG
5'SS Class:
major
3'SS Sequence:
TGTTTTCTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTGCCTTTAACC
Flanking Amino Acid:
SIQKAIHLCPDNPAAWAVLM
Intron Amino Acid Position:
1266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.2
39.5
Major BPS
70
0.5
1
67
39.8
Major PPT
80.3
0.68
0.8
73.8
36.9
Minor 5ss
36.4
-1.5
3.3
48.7
47.5
Minor BPS
77.2
0.83
1.2
79.71
35.3

Associated Gene:

Gene:
TTC37
Ensembl Gene ID:
ENSAPLG00000004474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029955
78535999 - 78583379
47381
ENSAPLT00000022679
78535999 - 78583311
47313
ENSAPLT00000004661
78535999 - 78583379
47381
ENSAPLT00000043925
78535999 - 78582545
46547
ENSAPLT00000038438
78535999 - 78579067
43069