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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78575695_78578403_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78575695 - 78578403
Intron Length:
2709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GGCTCCTTAAAT
Flanking Amino Acid:
MTSSSVAAWQWLAKVYQSQG
Intron Amino Acid Position:
1402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
72
0.77
1.4
79.2
42.2

Associated Gene:

Gene:
TTC37
Ensembl Gene ID:
ENSAPLG00000004474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029955
78535999 - 78583379
47381
ENSAPLT00000022679
78535999 - 78583311
47313
ENSAPLT00000004661
78535999 - 78583379
47381
ENSAPLT00000043925
78535999 - 78582545
46547
ENSAPLT00000038438
78535999 - 78579067
43069