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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78596026_78597941_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78596026 - 78597941
Intron Length:
1916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GAATTCTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
CTCTGTTGAATT
Flanking Amino Acid:
KYSVSGFEKMVMQLLGKIEA
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
62.3
0.28
1
60.6
40.9
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
49.6
0.05
1.9
67.73
44.1

Associated Gene:

Gene:
FAM81B
Ensembl Gene ID:
ENSAPLG00000004389
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004498
78581658 - 78603808
22151