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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78598072_78601630_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78598072 - 78601630
Intron Length:
3559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTAATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTGTCTCTAATT
Flanking Amino Acid:
SLGDLRGRVARCEASIAKLS
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.3
0.68
0.9
74.2
34
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
68.2
0.65
1.6
84.28
36.9

Associated Gene:

Gene:
FAM81B
Ensembl Gene ID:
ENSAPLG00000004389
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004498
78581658 - 78603808
22151