Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78745861_78748582_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78745861 - 78748582

Intron Length:

2722

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTTATG

5'SS Class:

major

3'SS Sequence:

CTGTGCATCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

AATGCTGGAAAA

Flanking Amino Acid:

DNLREPIYIKVFDYDFGLQD

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

76.3

38.9

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

64.7

0.33

0.9

58.1

37.2

Minor 5ss

45.5

-0.5

2.5

59.8

44.7

Minor BPS

42.1

-0.6

2.1

52.95

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019072

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046019

78720340 - 78753724

33385

ENSAPLT00000017484

78721363 - 78753724

32362