Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78919381_78919766_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

78919381 - 78919766

Intron Length:

386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

ATTTATAATTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

CTTCCCTTGATT

Flanking Amino Acid:

SSPGTDINVKDYAGWTPLHE

Intron Amino Acid Position:

707

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.13

0.6

93.1

14.6

Major BPS

90.4

0.7

90.2

19.3

Major PPT

74.9

0.56

71.9

42.1

Minor 5ss

41.9

-0.9

2.9

57.8

46.8

Minor BPS

0.87

1.2

84.59

36.2

Associated Gene:

Gene:

SLF1

Ensembl Gene ID:

ENSAPLG00000004056

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028901

78915759 - 78951898

36140

ENSAPLT00000004155

78915759 - 78952066

36308