About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78934993_78935662_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78934993 - 78935662
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTCACTT
Flanking Amino Acid:
VKAEVEFLTKSLVEETNSQH
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
95.9
1.03
0.5
95.6
15.1
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
56.7
0.29
1.8
79.05
38

Associated Gene:

Gene:
SLF1
Ensembl Gene ID:
ENSAPLG00000004056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028901
78915759 - 78951898
36140
ENSAPLT00000004155
78915759 - 78952066
36308