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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78951732_78951835_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78951732 - 78951835
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGAGA
5'SS Class:
major
3'SS Sequence:
CTTCTTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTCT
U12 Branch Point Sequence:
GTTTCCTTCTCG
Flanking Amino Acid:
GGLRAVDGRRVASGGLKRRI
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
65.7
41.7
Major BPS
36.2
-0.8
4.3
65.7
43.2
Major PPT
84.6
0.78
0.7
80.2
25.1
Minor 5ss
25.7
-2.8
2.9
22.2
37.3
Minor BPS
44.8
-0.5
3.6
68.06
45.3

Associated Gene:

Gene:
SLF1
Ensembl Gene ID:
ENSAPLG00000004056
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028901
78915759 - 78951898
36140