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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_78991522_79001687_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
78991522 - 79001687
Intron Length:
10166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGGA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTAAGT
Flanking Amino Acid:
IDEKIKKNSSSMEQCLKDLQ
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.4
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.9
0.94
0.6
88.3
21.5
Minor 5ss
27.9
-2.5
3.5
38
46.8
Minor BPS
75.6
0.88
1.5
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003907
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004003
78962807 - 79190527
227721