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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79001857_79006993_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79001857 - 79006993
Intron Length:
5137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAAAAT
5'SS Class:
major
3'SS Sequence:
TTACTTTTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CATTTCTAAAAT
Flanking Amino Acid:
GELMEFLRTLQSLLKNEQNQ
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
75.8
33.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.6
0.58
1
77.3
36.7
Minor 5ss
34.6
-1.7
3.2
45.8
43.6
Minor BPS
57.5
0.31
1.8
73.75
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003907
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004003
78962807 - 79190527
227721