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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79007664_79030239_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
79007664 - 79030239
Intron Length:
22576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTTAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTGCTTGAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGCTTGAACA
Flanking Amino Acid:
KKHRGTVHAVASQEYHKKGR
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
70.1
42
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.8
0.51
1
69.5
40.5
Minor 5ss
31
-2.2
2.4
27.1
35.9
Minor BPS
69.7
0.61
1.5
80.01
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003907
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004003
78962807 - 79190527
227721