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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79040732_79041712_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79040732 - 79041712
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAGGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
ATACAAATAACT
Flanking Amino Acid:
PEEQPKRIAKFCSDIMEELD
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
91.8
20.5
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
84.2
0.77
0.8
77.4
36.7
Minor 5ss
28.6
-2.5
4
44.4
43.7
Minor BPS
46.7
-0.1
2
69.03
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003907
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004003
78962807 - 79190527
227721