Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_7905410_7966079_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7905410 - 7966079

Intron Length:

60670

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAACA

5'SS Class:

strong_major

3'SS Sequence:

TTCTGCATTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

TTTTTCCTATTT

Flanking Amino Acid:

QSPVTKSVNKVYDRPQKHSA

Intron Amino Acid Position:

189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.99

0.8

83.4

27.8

Major BPS

0.45

0.9

67.6

25.3

Major PPT

79.3

0.66

0.9

70.1

40.1

Minor 5ss

33.8

-1.9

2.9

41.4

44.7

Minor BPS

60.1

0.4

1.9

84.08

Associated Gene:

Gene:

SETBP1

Ensembl Gene ID:

ENSAPLG00000017129

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042815

7827766 - 8074580

246815

ENSAPLT00000034374

7828875 - 8074580

245706