Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_79066045_79074590_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

79066045 - 79074590

Intron Length:

8546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

GTTTATTTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAA

U12 Branch Point Sequence:

TTTTGTTTATTT

Flanking Amino Acid:

LLVRILLRSSRSEVLNRDER

Intron Amino Acid Position:

835

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

87.3

26.9

Major BPS

78.4

0.71

0.9

69.4

37.7

Major PPT

74.9

0.56

1.1

75.5

38.3

Minor 5ss

40.1

-1.1

2.8

53.2

37.3

Minor BPS

60.4

0.41

83.14

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003907

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004003

78962807 - 79190527

227721